Logo team MeForBio

Collaborations MeForBio

Grants

Current
  • GRIOTE (Région Pays de la Loire 2013-2017)
  • BioTempo (ANR 2011-2014)
  • GDRE SysBio: European Network in Systems Biology (CNRS – MPG 2007-2011 and 2011-2015)
Former
  • Circlock (PEPII CNRS 2011-2012)
  • TiGeRNet (German-French Procope 2009-2010)
  • BIL (Région Pays de Loire 2007-2010)
  • BioAtlanStic (AtlanSTIC 2006-2008)

International collaborations

French methodological partners

  • LINA, Univ. Nantes. Combi team.
  • Dyliss, INRIA Rennes.
  • I3S, Univ. Nice.

Biological partners (Human models)

Software MeForBio

BioTempo Mobyle Server

A web portal gathering applications specific to the BioTempo ANR project.
http://mobyle.biotempo.univ-nantes.fr/cgi-bin/portal.py#welcome

caspo

Combines PyASP and CellNOpt to provide an easy to use software for learning Boolean logic models describing the immediate-early response of protein signaling networks.
http://caspo.genouest.org/

PIDtoSIF

Method to extract interaction graphs linking growth factor stimuli with genes and cell states, from the Pathways Interaction Database. The extracted graphs are left in Cytoscape format.
http://tigacenter.bioquant.uni-heidelberg.de/supplements/inferringFromPID.html

BioASP

Answer Set Programming implementation to approach several systems biology problems.
http://www.cs.uni-potsdam.de/~sthiele/bioasp/http://www.cs.uni-potsdam.de/~sthiele/bioasp/

BioQuali

Network Compatibility and products variation inference in a biological network.

Pint

Pint implements the language, simulation, formal analysis, and translation of Process Hitting models, which is a recently introduced formalism suited for modelling qualitative dynamics of biological networks. The Process Hitting comes with powerful static analysis for dynamical properties, including fix points, successive reachability properties, and cut sets for reachability. Loïc Paulevé created Pint during his PhD thesis in the MeForBio team; he continues to maintain and enrich the tool. Pint also contains contributions from Maxime Folschette.
http://loicpauleve.name/pint/
Logo-cnrsLogo-AtlanSticLogo-UniversiteNantesLogo-MinesNantesLogo-CentraleNanteslunamCOMUE